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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01044g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 45015.9 Da PI: 8.2536 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 74 | 96 | 5 | 26 |
--SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG..tCkyGdrCkFaHg 26 C+f+ + G C+ G+ C+F H+ Peaxi162Scf01044g00028.1 74 VCKFWVQ-GdnKCRNGNDCRFLHS 96 7******.88*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.873 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.35 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 69 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.026 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 74 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-5 | 75 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.6E-9 | 97 | 153 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 7.0E-6 | 103 | 142 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.93E-48 | 104 | 404 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 7.1E-6 | 106 | 142 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 19.881 | 110 | 319 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.817 | 110 | 151 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 6.2E-6 | 129 | 143 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 129 | 143 | IPR019775 | WD40 repeat, conserved site |
Gene3D | G3DSA:2.130.10.10 | 3.5E-36 | 164 | 401 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 14 | 182 | 221 | IPR001680 | WD40 repeat |
SMART | SM00320 | 1.6E-4 | 232 | 270 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0027 | 235 | 270 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.611 | 239 | 279 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 6.2E-6 | 257 | 271 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.9E-5 | 273 | 310 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.0E-4 | 275 | 309 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 8.737 | 280 | 319 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 6.2E-6 | 297 | 311 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 180 | 316 | 357 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.25 | 360 | 397 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MSNKHQKATP VCVHWKAGRC TRFQCRFLHS ELQAPQQHNG IVMASTKGNP KFKNTWRNTT 60 AADGVVTAKK AAVVCKFWVQ GDNKCRNGND CRFLHSWTTK DCGFTLLKQL EGHQKTVTGI 120 ALPESGSSLY SGSMDKTIRS WDCHSGQNTG VFNLDGEVGC MLSEGSWIFV GLTNHVKAQN 180 TQTGTLLNLN GPVFGQVYAL VFSHNNLLLA GTENGNILAW KYNKNNGIGT VEQQATGELT 240 GHTNRVISLV VGGCDRLYSG SKDNSIRVWS LEKMQCLQVL KDHTSEVTSV LCWDQYLLSC 300 SLDKTIKVWA AKDSGNIEVI HTHQEEHALL TLFGMNDSEA KPVLFCSCTD NTIRAYDLPS 360 FSERGKIFSK EPVRCIALGP AGLFFTGDES GHVRVWKWST ESNTSTAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3v7d_D | 1e-13 | 82 | 364 | 132 | 385 | Cell division control protein 4 |
3v7d_B | 1e-13 | 82 | 364 | 132 | 385 | Cell division control protein 4 |
3mks_D | 1e-13 | 82 | 364 | 132 | 385 | Cell division control protein 4 |
3mks_B | 1e-13 | 82 | 364 | 132 | 385 | Cell division control protein 4 |
1nex_D | 1e-13 | 82 | 364 | 132 | 385 | CDC4 protein |
1nex_B | 1e-13 | 82 | 364 | 132 | 385 | CDC4 protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564720.1 | 1e-180 | PREDICTED: zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 1e-149 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | K4BFA8 | 1e-177 | K4BFA8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g026350.2.1 | 1e-177 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2884 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-145 | zinc finger WD40 repeat protein 1 |