PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01044g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 408aa    MW: 45015.9 Da    PI: 8.2536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01044g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-067496526
                              --SGGGGTS..--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartG..tCkyGdrCkFaHg 26
                               C+f+ + G   C+ G+ C+F H+
  Peaxi162Scf01044g00028.1 74 VCKFWVQ-GdnKCRNGNDCRFLHS 96
                              7******.88*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.873632IPR000571Zinc finger, CCCH-type
SMARTSM003560.35631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7886998IPR000571Zinc finger, CCCH-type
SMARTSM003560.0266997IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-47496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-575114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.6E-997153IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.0E-6103142IPR001680WD40 repeat
SuperFamilySSF509782.93E-48104404IPR017986WD40-repeat-containing domain
PfamPF004007.1E-6106142IPR001680WD40 repeat
PROSITE profilePS5029419.881110319IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.817110151IPR001680WD40 repeat
PRINTSPR003206.2E-6129143IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780129143IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.103.5E-36164401IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032014182221IPR001680WD40 repeat
SMARTSM003201.6E-4232270IPR001680WD40 repeat
PfamPF004000.0027235270IPR001680WD40 repeat
PROSITE profilePS5008211.611239279IPR001680WD40 repeat
PRINTSPR003206.2E-6257271IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-5273310IPR001680WD40 repeat
PfamPF004004.0E-4275309IPR001680WD40 repeat
PROSITE profilePS500828.737280319IPR001680WD40 repeat
PRINTSPR003206.2E-6297311IPR020472G-protein beta WD-40 repeat
SMARTSM00320180316357IPR001680WD40 repeat
SMARTSM003200.25360397IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSNKHQKATP VCVHWKAGRC TRFQCRFLHS ELQAPQQHNG IVMASTKGNP KFKNTWRNTT  60
AADGVVTAKK AAVVCKFWVQ GDNKCRNGND CRFLHSWTTK DCGFTLLKQL EGHQKTVTGI  120
ALPESGSSLY SGSMDKTIRS WDCHSGQNTG VFNLDGEVGC MLSEGSWIFV GLTNHVKAQN  180
TQTGTLLNLN GPVFGQVYAL VFSHNNLLLA GTENGNILAW KYNKNNGIGT VEQQATGELT  240
GHTNRVISLV VGGCDRLYSG SKDNSIRVWS LEKMQCLQVL KDHTSEVTSV LCWDQYLLSC  300
SLDKTIKVWA AKDSGNIEVI HTHQEEHALL TLFGMNDSEA KPVLFCSCTD NTIRAYDLPS  360
FSERGKIFSK EPVRCIALGP AGLFFTGDES GHVRVWKWST ESNTSTAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3v7d_D1e-1382364132385Cell division control protein 4
3v7d_B1e-1382364132385Cell division control protein 4
3mks_D1e-1382364132385Cell division control protein 4
3mks_B1e-1382364132385Cell division control protein 4
1nex_D1e-1382364132385CDC4 protein
1nex_B1e-1382364132385CDC4 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564720.11e-180PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-149C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLK4BFA81e-177K4BFA8_SOLLC; Uncharacterized protein
STRINGSolyc03g026350.2.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-145zinc finger WD40 repeat protein 1